#!/bin/sh
export DOMREFINE_DIR=/home/chiba/domrefine1.1.1
export PATH=$DOMREFINE_DIR/bin:$DOMREFINE_DIR/bin_dev:$DOMREFINE_DIR/lib:$PATH
export PERL5LIB=$DOMREFINE_DIR/pm:$PERL5LIB
export DOMREFINE_TMP=$HOME/tmp
export DOMREFINE_CACHE=$DOMREFINE_DIR/cache
export DOMREFINE_READ_ALIGNMENT_CACHE=1
export DOMREFINE_WRITE_ALIGNMENT_CACHE=1
export DOMREFINE_SEQ_DB=/db/project/MBGD/database/bldb
export DOMREFINE_ALIGNER=clustalo_order
export DOMREFINE_QSUB_TMP=$HOME/tmp/sge
export DOMREFINE_QSUB_OPT=''
export DOMREFINE_QSUB_UNIT=10
export DOMREFINE_QUEUE=small
export DOMREFINE_QUEUE_SIZE=150
export DOMREFINE_QUEUE_CHECK_INTERVAL=10

domrefine.pl "$@"
