![[PukiWiki]](image/header_title.png "[PukiWiki]")
#author("2024-07-01T16:44:23+09:00","default:mbgdadm","mbgdadm") #author("2024-07-01T16:45:13+09:00","default:mbgdadm","mbgdadm") #password(mbgd2022) [[MBGD Documents]] #contents //------------------- // はじめの説明 //------------------- * Profile search [#zb0ea06f] ** Screen Explanation [#t2fc451f] #ref(Profile_top.png,left,nowrap,Profile top,75%) ① Category(phenotype, environment information, taxonomy) ~ ② List of items ~ ③ List of genus ~ ④ Presence organism box ~ ⑤ Absence organism box ~ ⑥ [Analyze] button ~ (a) If checked, only items that are common between the added items and items already in the presence organism box will remain. ~ (b) Add the item selected in List of genus to the Presence organism box. ~ (c) Clean up the Presence organism box ~ (d) Add to the Absence organism box what is not included in the Presence organism box ~ (e) Add the item selected in List of genus to the Absence organism box. ~ (f) Clean up the Absence organism box ~ ** Search flow [#eb415739] + Select category(phenotype, environment information, taxonomy) how to refine your organism ~ #ref(Profile_pheno.png,left,nowrap,Profile top,75%) + Selecting an item from the list will cause the corresponding genus to be selected ~ + Select genus and place it in the Presence/Absence organism box + Click [Analyze] button #ref(profile_res.png,left,nowrap,Profile top,75%) ** Category [#c06cb0b6] *** phenotype [#ha6b9bba] Select using phenotype information from gold #ref(Profile_pheno.png,left,nowrap,Profile top,75%) *** environment [#vf82b6af] Select using environment information #ref(Profile_env.png,left,nowrap,Profile env,75%) *** taxonomy [#ec107c77] Select using taxonomy information #ref(Profile_tax.png,left,nowrap,Profile tax,75%) *** file [#n2969caf] ''file format'' ~ Comma Separated Format (genus name, value) ~ value 1= Add to presence organism box ~ value 0= Add to absence organism box ~ [[download sample.csv:https://mbgd.nibb.ac.jp/data/sample.csv]] Haloarcula,1 Halomicrobium,0 Halorhabdus,1 Halorientalis,0 Natronomonas, Haloarculaceae, Halalkalicoccus, ''heder format'' ~ # G = 1 (convert "G" to 1) # T = 0 (convert "T" to 0) # 0.5 and above to 1 # 0.2 or less to 0 # between 0.3 and 0.4 to 1 #ref(Profile_file.png,left,nowrap,Profile file,75%)
