![[PukiWiki]](image/header_title.png "[PukiWiki]")
#author("2025-02-06T13:27:59+09:00","default:mbgdadm","mbgdadm") #author("2025-02-07T08:08:34+09:00","default:mbgdadm","mbgdadm") [[MyMBGD]] #contents //------------------- // 解析 //------------------- * Data Analysis [#efc706d4] // ** Mapping to default ortholog group/Genomaple alnalysis [#m4e97fae] * Mapping to default ortholog group/Genomaple alnalysis (assignment mode) [#m4e97fae] //------------------- // 実行 Mapping //------------------- *** Execution [#tc996ea6] ** Execution [#tc996ea6] + Click "Execute Analysis" in "Genome Annotation by Ortholog Group Assignment (assignment mode)" section of the MyMBGD home page. #ref(MyMBGD/Data Analysis/MyMBGD_home_analysis1.png,left,wrap,MyMBGD_home_analysis1,75%) ~ + Select user genome and click "Execute Analysis". #ref(MyMBGD/Data Analysis/MBGD_Annalysis_1_input.png,left,wrap,MBGD_Annalysis_1_input,75%) //------------------- // 結果 Mapping //------------------- *** Result mapping [#e5810d56] ** Result mapping [#e5810d56] + Click "Display Results" in "Genome Annotation by Ortholog Group Assignment (assignment mode)" section of the MyMBGD home page. #ref(MyMBGD/Data Analysis/MyMBGD_home_result1.png,left,wrap,MyMBGD_home_result1,75%) ~ + Click on the three buttons ("C", "O", "D") in the user genome list to see the results.~ ・ C ... Show chromosome map ・ O ... Show orthology assigment ・ D ... Download orthology assignment //Select user genomes and public genomes, and click "Compare the selected genomes in genomaple viewer" to see the Genomaple results. #ref(MyMBGD/Data Analysis/MBGD_Annalysis_1_result1.png,left,wrap,MBGD_Annalysis_1_result1,75%) ~ //+ The result is displayed. //#ref(MBGD_Annalysis_1_result2.png,left,wrap,MBGD_Annalysis_1_result2,75%) #ref(MyMBGD/Data Analysis/ChromosomeMap.png,left,wrap,ChromosomeMap,75%) //------------------- // 結果 genomaple //------------------- *** Result genomaple [#ne4cb426] ** Result genomaple [#ne4cb426] + Click "Display Results" in "Genome Annotation by Ortholog Group Assignment" section of the MyMBGD home page. #ref(MyMBGD/Data Analysis/MyMBGD_home_result1.png,left,wrap,MyMBGD_home_result1,75%) ~ + Click "Multi-comparative analysis (Genomaple)" tab.~ #ref(MyMBGD/Data Analysis/MBGD_Annalysis_1_result3.png,left,wrap,MBGD_Annalysis_1_result2,75%) + Select the public genome and user genome to compare. ~ + Click "Compare the selected genomes in genomaple viewer" button. ~ + Display genomaple viewer ~ #ref(MyMBGD/Data Analysis/MBGD_Annalysis_1_result2.png,left,wrap,MBGD_Annalysis_1_result2,75%) [[Description of genomaple viewer:https://mbgd.nibb.ac.jp/docs/?MBGD/Genomaple]]
