![[PukiWiki]](image/header_title.png "[PukiWiki]")
#author("2022-07-29T11:45:06+09:00","default:mbgdadm","mbgdadm") #author("2022-07-29T11:49:02+09:00","default:mbgdadm","mbgdadm") [[MyMBGD]] #contents //------------------- // 解析 //------------------- * Data Analysis [#t3ded380] // ** Mapping to default ortholog group/Genomaple alnalysis [#cbcc559c] //------------------- // 実行 Mapping //------------------- *** Execution [#ie26e610] + Click "Execute Analysis" in "Genome Annotation by Ortholog Group Assignment" section of the MyMBGD home page. #ref(MyMBGD_home_analysis1.png,left,wrap,MyMBGD_home_analysis1,75%) ~ + Select user genome and click "Execute Analysis". #ref(MBGD_Annalysis_1_input.png,left,wrap,MBGD_Annalysis_1_input,75%) //------------------- // 結果 Mapping //------------------- *** Result [#k814df04] + Click "Display Results" in "Genome Annotation by Ortholog Group Assignment" section of the MyMBGD home page. #ref(MyMBGD_home_result1.png,left,wrap,MyMBGD_home_result1,75%) ~ + Click on the three buttons ("C", "O", "D") in the user genome list to see the results.~ ・ C ... Show chromosome map ・ O ... Show orthology assigment ・ D ... Download orthology assignment //Select user genomes and public genomes, and click "Compare the selected genomes in genomaple viewer" to see the Genomaple results. #ref(MBGD_Annalysis_1_result1.png,left,wrap,MBGD_Annalysis_1_result1,75%) ~ //+ The result is displayed. //#ref(MBGD_Annalysis_1_result2.png,left,wrap,MBGD_Annalysis_1_result2,75%) #ref(ChromosomeMap.png,left,wrap,ChromosomeMap,75%) ** Clustering (Comparison of closely related species) [#q65bf22f] //------------------- // 実行 Clustering //------------------- *** Execution [#ff700ddc] + Click "Execute Analysis" in "Ortholog Clustering" section of the MyMBGD home page. #ref(MyMBGD_home_analysis2.png,left,wrap,MyMBGD_home_analysis2,75%) ~ + Select user genome and public genome, and then click "Execute Analysis". + The result is displayed. #ref(MBGD_Annalysis_2_input.png,left,wrap,create new genome,75%) ~ //------------------- // 結果 Clustering //------------------- *** Result [#j73c8db4] + Click "Display Results" in "Ortholog Clustering" section of the MyMBGD home page. #ref(MyMBGD_home_result2.png,left,wrap,MyMBGD_home_result2,75%) ~ + Click on the two buttons ("V","R") in the analysis list to see the results.~ ・V ... Clustering data ・R ... Corealign data #ref(MBGD_Annalysis_2_result1.png,left,wrap,create new genome,75%) ~ + The result is displayed. #ref(MBGD_Annalysis_2_result2.png,left,wrap,create new genome,75%)
