MBGD/Introduction/Phylogenetic_pattern_analysis
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#password(mbgd2022)
[[MBGD Documents]]
#contents
//-------------------
// はじめの説明
//-------------------
* Profile search [#zb0ea06f]
** Screen Explanation [#t2fc451f]
#ref(Profile_top.png,left,nowrap,Profile top,75%)
① Category(phenotype, environment information, taxonomy) ~
② List of items ~
③ List of genus ~
④ Presence organism box ~
⑤ Absence organism box ~
⑥ [Analyze] button ~
(a) If checked, only items that are common between the ad...
(b) Add the item selected in List of genus to the Presenc...
(c) Clean up the Presence organism box ~
(d) Add to the Absence organism box what is not included ...
(e) Add the item selected in List of genus to the Absence...
(f) Clean up the Absence organism box ~
** Search flow [#eb415739]
+ Select category(phenotype, environment information, tax...
#ref(Profile_pheno.png,left,nowrap,Profile top,75%)
+ Selecting an item from the list will cause the correspo...
+ Select genus and place it in the Presence/Absence organ...
+ Click [Analyze] button
#ref(profile_res.png,left,nowrap,Profile top,75%)
** Category [#c06cb0b6]
*** phenotype [#ha6b9bba]
Select using phenotype information from gold
#ref(Profile_pheno.png,left,nowrap,Profile top,75%)
*** environment [#vf82b6af]
Select using environment information
#ref(Profile_env.png,left,nowrap,Profile env,75%)
*** taxonomy [#ec107c77]
Select using taxonomy information
#ref(Profile_tax.png,left,nowrap,Profile tax,75%)
*** file [#n2969caf]
''file format'' ~
Comma Separated Format (genus name, value) ~
value 1= Add to presence organism box ~
value 0= Add to absence organism box ~
[[download sample.csv:https://mbgd.nibb.ac.jp/data/sample...
Haloarcula,1
Halomicrobium,0
Halorhabdus,1
Halorientalis,0
Natronomonas,
Haloarculaceae,
Halalkalicoccus,
''heder format'' ~
# G = 1 (convert "G" to 1)
# T = 0 (convert "T" to 0)
# 0.5 and above to 1
# 0.2 or less to 0
# between 0.3 and 0.4 to 1
#ref(Profile_file.png,left,nowrap,Profile file,75%)
End:
#password(mbgd2022)
[[MBGD Documents]]
#contents
//-------------------
// はじめの説明
//-------------------
* Profile search [#zb0ea06f]
** Screen Explanation [#t2fc451f]
#ref(Profile_top.png,left,nowrap,Profile top,75%)
① Category(phenotype, environment information, taxonomy) ~
② List of items ~
③ List of genus ~
④ Presence organism box ~
⑤ Absence organism box ~
⑥ [Analyze] button ~
(a) If checked, only items that are common between the ad...
(b) Add the item selected in List of genus to the Presenc...
(c) Clean up the Presence organism box ~
(d) Add to the Absence organism box what is not included ...
(e) Add the item selected in List of genus to the Absence...
(f) Clean up the Absence organism box ~
** Search flow [#eb415739]
+ Select category(phenotype, environment information, tax...
#ref(Profile_pheno.png,left,nowrap,Profile top,75%)
+ Selecting an item from the list will cause the correspo...
+ Select genus and place it in the Presence/Absence organ...
+ Click [Analyze] button
#ref(profile_res.png,left,nowrap,Profile top,75%)
** Category [#c06cb0b6]
*** phenotype [#ha6b9bba]
Select using phenotype information from gold
#ref(Profile_pheno.png,left,nowrap,Profile top,75%)
*** environment [#vf82b6af]
Select using environment information
#ref(Profile_env.png,left,nowrap,Profile env,75%)
*** taxonomy [#ec107c77]
Select using taxonomy information
#ref(Profile_tax.png,left,nowrap,Profile tax,75%)
*** file [#n2969caf]
''file format'' ~
Comma Separated Format (genus name, value) ~
value 1= Add to presence organism box ~
value 0= Add to absence organism box ~
[[download sample.csv:https://mbgd.nibb.ac.jp/data/sample...
Haloarcula,1
Halomicrobium,0
Halorhabdus,1
Halorientalis,0
Natronomonas,
Haloarculaceae,
Halalkalicoccus,
''heder format'' ~
# G = 1 (convert "G" to 1)
# T = 0 (convert "T" to 0)
# 0.5 and above to 1
# 0.2 or less to 0
# between 0.3 and 0.4 to 1
#ref(Profile_file.png,left,nowrap,Profile file,75%)
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